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Commit 792dba47 authored by Jonathan Lambrechts's avatar Jonathan Lambrechts
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rewrite readMsh and rename to readIdx

parent e2e4b25f
Pipeline #1172 passed with stage
in 27 minutes and 33 seconds
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benchmarks/congo/particles.py
View file @ 792dba47
......@@ -66,7 +66,7 @@ groups.splitGroupsByPhysicalTag()
# Bathymetry
bathDC = dgDofContainer(groups, 1)
bathDC.readMsh("Bath/congoCoast-labels-clean_bath_smooth/congoCoast-labels-clean_bath_smooth.idx")
bathDC.importIdx("Bath/congoCoast-labels-clean_bath_smooth/congoCoast-labels-clean_bath_smooth.idx")
#-------------------------------------------------------------------------------
#------- SET UP DIFFUSIVITY ----------------------------------------------------
......@@ -190,7 +190,7 @@ for n in range(1,LP_TotIter+1):
print('Problem in loadedSolutions!')
else:
print('-> simSolution not already loaded. Loading it from file. File is (gbr-%06d'%( iterNumberWanted )+').')
simSolution.readMsh('output/idx/idx-%06d'%( iterNumberWanted / simExportGap )+'.idx')
simSolution.importIdx('output/idx/idx-%06d'%( iterNumberWanted / simExportGap )+'.idx')
loadedSolutions[0] = iterNumberWanted
else:
......@@ -217,7 +217,7 @@ for n in range(1,LP_TotIter+1):
else:
print('-> simSolutionUnder not already loaded. Loading it from file. l is:', l, '. File is (gbr-%06d'%( iterNumberWanted-l )+').')
t_solUnder = simStartTime + float(iterNumberWanted-l)*simDt
simSolutionUnder.readMsh('output/idx/idx-%06d'%( (iterNumberWanted-l) / simExportGap )+'.idx')
simSolutionUnder.importIdx('output/idx/idx-%06d'%( (iterNumberWanted-l) / simExportGap )+'.idx')
loadedSolutions[2] = iterNumberWanted-l
m=0
......@@ -242,7 +242,7 @@ for n in range(1,LP_TotIter+1):
else:
print('-> simSolutionOver not already loaded. Loading it from file. m is:', m, '. File is (gbr-%06d'%( iterNumberWanted+m )+').')
t_solOver = simStartTime + float(iterNumberWanted+m)*simDt
simSolutionOver.readMsh('output/idx/idx-%06d'%( (iterNumberWanted+m) / simExportGap )+'.idx')
simSolutionOver.importIdx('output/idx/idx-%06d'%( (iterNumberWanted+m) / simExportGap )+'.idx')
loadedSolutions[1] = iterNumberWanted+m
scaleFactor = 1.0 - (t-t_solUnder)/(t_solOver-t_solUnder)
......
benchmarks/congo/prepro.py
View file @ 792dba47
......@@ -136,7 +136,7 @@ def partitionMultirate(fileName, bathFileName, nMRGroups, mRAlgo, nPart, outputF
UTMtoLonLatDegrees = functionNumpy(3, UTMtoLonLatDegrees_func, [UTM])
#lonLatDegrees = functionC("./lib_congo.so","UTMtoLonLatDegrees",3,[UTM])
bath = dgDofContainer(groups, 1);
bath.readMsh(bathFileName)
bath.importIdx(bathFileName)
claw = dgConservationLawShallowWater2d()
solution = dgDofContainer(groups, claw.getNbFields())
Cd = functionNumpy(1, bottomDrag_const_n0235, [solution.getFunction(), bath.getFunction()])
......@@ -221,7 +221,7 @@ if Msg.GetCommRank() == 0 :
groups = dgGroupCollection(model, 2, 1, True)
# Bathymetry of the model.
bathDof = dgDofContainer(groups, 1)
bathDof.readMsh("Bath/"+param.fileName+"_bath_smooth/"+param.fileName+"_bath_smooth.idx")
bathDof.importIdx("Bath/"+param.fileName+"_bath_smooth/"+param.fileName+"_bath_smooth.idx")
# Associate bathymetry to every mesh node.
globNodeId2Bath = {}
......
benchmarks/congo/run2d.py
View file @ 792dba47
......@@ -88,7 +88,7 @@ groups.splitGroupsByPhysicalTag()
# Grouped parameters.
bath = dgDofContainer(groups, 1)
bath.readMsh("Bath/"+param.fileName+"_bath_smooth/"+param.fileName+"_bath_smooth.idx")
bath.importIdx("Bath/"+param.fileName+"_bath_smooth/"+param.fileName+"_bath_smooth.idx")
bath_PC = functionPrecomputed(groups, 3, 1)
bath_PC.compute(bath.getFunction())
bathGradient_PC = functionPrecomputed(groups, 3, 3)
......@@ -104,7 +104,7 @@ solution = dgDofContainer(groups, 3)
start = 0
if (param.realTi != param.Ti):
start = int((t-param.realTi)/(dt*param.export))
solution.readMsh(param.outputDir+"/idx/idx-"+str(start).zfill(6)+".idx")
solution.importIdx(param.outputDir+"/idx/idx-"+str(start).zfill(6)+".idx")
else:
solution.setAll(0.)
......
benchmarks/meshGeneration/extrudeWorld.py
View file @ 792dba47
......@@ -18,7 +18,7 @@ bath = dgDofContainer(groups, 1);
filename = "world"
outputDir = "bath"
bathname= outputDir+"/"+filename+"_bath_smooth"+"/"+filename+"_bath_smooth.idx"
bath.readMsh(bathname)
bath.importIdx(bathname)
def getLayers (x, y, iGroup, iElement, iVertex) :
h = bath.getGroupProxy(iGroup)(iVertex, iElement);
MinDiff = 1e10
......
benchmarks/sw2Converge/ConvergenceInSpace.py
View file @ 792dba47
......@@ -142,7 +142,7 @@ gRef = GModel()
gRef.load("output/"+FileName+"-ref-%i.msh" % ref)
groupsRef = dgGroupCollection(gRef, 2, 1)
dofRef = dgDofContainer(groupsRef, 3)
dofRef.readMsh("output/dof-ref-%i-end/dof-ref-%i-end.idx" % (ref, ref))
dofRef.importIdx("output/dof-ref-%i-end/dof-ref-%i-end.idx" % (ref, ref))
XYZRef = groupsRef.getFunctionCoordinates()
solRef = dofRef.getFunction()
......@@ -163,7 +163,7 @@ for i in range(0, nstage+1):
g.load("output/"+FileName+"-%i.msh" % i)
groups = dgGroupCollection(g, 2, 1)
dof = dgDofContainer(groups, 3)
dof.readMsh("output/dof-%i-end/dof-%i-end.idx" % (i, i))
dof.importIdx("output/dof-%i-end/dof-%i-end.idx" % (i, i))
evaluator = dgFunctionEvaluator(groups, dof.getFunction())
fsol = evaluator.newFunction(XYZRef)
......
benchmarks/sw2Converge/conv.py
View file @ 792dba47
......@@ -58,7 +58,7 @@ gRef = GModel()
gRef.load("output/square-%i.msh" % nstage)
groupsRef = dgGroupCollection(gRef, 2, 1)
dofRef = dgDofContainer(groupsRef, 3)
dofRef.readMsh("output/dof-%i-end/dof-%i-end.idx" % (nstage, nstage))
dofRef.importIdx("output/dof-%i-end/dof-%i-end.idx" % (nstage, nstage))
XYZRef = groupsRef.getFunctionCoordinates()
solRef = dofRef.getFunction()
......@@ -75,7 +75,7 @@ for i in range(0, nstage):
g.load("output/square-%i.msh" % i)
groups = dgGroupCollection(g, 2, 1)
dof = dgDofContainer(groups, 3)
dof.readMsh("output/dof-%i-end/dof-%i-end.idx" % (i, i))
dof.importIdx("output/dof-%i-end/dof-%i-end.idx" % (i, i))
evaluator = dgFunctionEvaluator(groups, dof.getFunction())
fsol = evaluator.newFunction(XYZRef)
......
benchmarks/swe3d/gbr/prepro.py
View file @ 792dba47
......@@ -92,7 +92,7 @@ def process(name) :
model.load(mesh1)
groups = dgGroupCollection(model, 2, 1, True)
bathDof = dgDofContainer(groups, 1)
bathDof.readMsh("./bathSmooth/bathSmooth.idx")
bathDof.importIdx("./bathSmooth/bathSmooth.idx")
globNodeId2Bath = {}
dataProx = fullMatrixDouble()
......
benchmarks/swe3d/rhineRofi/plotting/rhineRofiPlotSurfStimes.py
View file @ 792dba47
......@@ -132,13 +132,13 @@ for ifig,export_count in enumerate(export_counts) :
SFunc = SDof.getFunction()
uvFunc = uvDof.getFunction()
#etaDof.readMsh( idxDir + 'eta2d/'+ 'eta2d'+istr+'.idx')
#etaDof.importIdx( idxDir + 'eta2d/'+ 'eta2d'+istr+'.idx')
#print 'Reading '+idxDir + 'uv/'+ 'uv'+istr+'.idx'
#SDof.readMsh( idxDir + 'S/'+ 'S'+istr+'.idx')
#uvDof.readMsh( idxDir + 'uv/'+ 'uv'+istr+'.idx')
#SDof.importIdx( idxDir + 'S/'+ 'S'+istr+'.idx')
#uvDof.importIdx( idxDir + 'uv/'+ 'uv'+istr+'.idx')
print 'Reading '+idxDir + 'uv'+istr+'.idx'
SDof.readMsh( idxDir + 'S'+istr+'.idx')
uvDof.readMsh( idxDir + 'uv'+istr+'.idx')
SDof.importIdx( idxDir + 'S'+istr+'.idx')
uvDof.importIdx( idxDir + 'uv'+istr+'.idx')
dgDCMap = dataCacheMap(dataCacheMap.POINT_MODE, groups)
SCache = dgDCMap.get(SFunc)
......
benchmarks/swe3d/rhineRofi/plotting/rhineRofiPlotTurbtimes.py
View file @ 792dba47
......@@ -100,14 +100,14 @@ if generateData :
for i,export_count in enumerate(export_counts) :
istr = "_{0:05}".format(export_count)
print 'Reading '+idxDir + 'nn/'+ 'nn'+istr+'.idx'
#etaDof.readMsh( idxDir + 'eta2d/'+ 'eta2d'+istr+'.idx')
#nnDof.readMsh( idxDir + 'S/'+ 'S'+istr+'.idx')
#uvDof.readMsh( idxDir + 'uv/'+ 'uv'+istr+'.idx')
[time, step] = etaDof.readMsh( idxDir + 'eta2d'+istr+'.idx')
[time, step] = nnDof.readMsh( idxDir + 'nn'+istr+'.idx')
[time, step] = ssDof.readMsh( idxDir + 'ss'+istr+'.idx')
[time, step] = uvDof.readMsh( idxDir + 'uv'+istr+'.idx')
[time, step] = SDof.readMsh( idxDir + 'S'+istr+'.idx')
#etaDof.importIdx( idxDir + 'eta2d/'+ 'eta2d'+istr+'.idx')
#nnDof.importIdx( idxDir + 'S/'+ 'S'+istr+'.idx')
#uvDof.importIdx( idxDir + 'uv/'+ 'uv'+istr+'.idx')
[time, step] = etaDof.importIdx( idxDir + 'eta2d'+istr+'.idx')
[time, step] = nnDof.importIdx( idxDir + 'nn'+istr+'.idx')
[time, step] = ssDof.importIdx( idxDir + 'ss'+istr+'.idx')
[time, step] = uvDof.importIdx( idxDir + 'uv'+istr+'.idx')
[time, step] = SDof.importIdx( idxDir + 'S'+istr+'.idx')
dgCG3d.apply(nnDof,nnDof)
dgCG3d.apply(ssDof,ssDof)
nnDof.exportMsh(dataDir+'/nnCG'+istr,time,export_count)
......
benchmarks/swe3d/rhineRofi/plotting/rhineRofiPlotUVtimes.py
View file @ 792dba47
......@@ -88,12 +88,12 @@ if generateData :
for i,export_count in enumerate(export_counts) :
istr = "_{0:05}".format(export_count)
print 'Reading '+idxDir + 'uv/'+ 'uv'+istr+'.idx'
#etaDof.readMsh( idxDir + 'eta2d/'+ 'eta2d'+istr+'.idx')
#SDof.readMsh( idxDir + 'S/'+ 'S'+istr+'.idx')
#uvDof.readMsh( idxDir + 'uv/'+ 'uv'+istr+'.idx')
etaDof.readMsh( idxDir + 'eta2d'+istr+'.idx')
SDof.readMsh( idxDir + 'S'+istr+'.idx')
uvDof.readMsh( idxDir + 'uv'+istr+'.idx')
#etaDof.importIdx( idxDir + 'eta2d/'+ 'eta2d'+istr+'.idx')
#SDof.importIdx( idxDir + 'S/'+ 'S'+istr+'.idx')
#uvDof.importIdx( idxDir + 'uv/'+ 'uv'+istr+'.idx')
etaDof.importIdx( idxDir + 'eta2d'+istr+'.idx')
SDof.importIdx( idxDir + 'S'+istr+'.idx')
uvDof.importIdx( idxDir + 'uv'+istr+'.idx')
dgDCMap2d.setPoint(groups2d,x,y,0)
eta = etaCache.get()(0,0)
zs = linspace(zMin,eta,nZ)
......
benchmarks/swe3d/warnerEstuary/plotting/warnerEstuaryPlotTrans.py
View file @ 792dba47
......@@ -66,8 +66,8 @@ istr = "_{0:05}".format(export_count)
#tkeDof.importMsh( odir + 'tke' + istr)
#epsDof.importMsh( odir + 'eps' + istr)
#lDof.importMsh( odir + 'l' + istr)
etaDof.readMsh( idxDir + 'eta2d'+istr+'.idx')
SDof.readMsh( idxDir + 'S'+istr+'.idx')
etaDof.importIdx( idxDir + 'eta2d'+istr+'.idx')
SDof.importIdx( idxDir + 'S'+istr+'.idx')
def bathFunc(x) :
return 10*(1.-x/50000.)/2.0 + 5*(1.+x/50000.)/2.0
......
benchmarks/swe3d/warnerEstuary/plotting/warnerEstuaryPlotTransUVSframes.py
View file @ 792dba47
......@@ -95,10 +95,10 @@ tkeCache = dgDCMap.get(tkeFunc)
for export_count in export_counts :
istr = "_{0:05}".format(export_count)
etaDof.readMsh( idxDir + 'eta2d'+istr+'.idx')
SDof.readMsh( idxDir + 'S'+istr+'.idx')
#tkeDof.readMsh( idxDir + 'tke'+istr+'.idx')
uvDof.readMsh( idxDir + 'uv'+istr+'.idx')
etaDof.importIdx( idxDir + 'eta2d'+istr+'.idx')
SDof.importIdx( idxDir + 'S'+istr+'.idx')
#tkeDof.importIdx( idxDir + 'tke'+istr+'.idx')
uvDof.importIdx( idxDir + 'uv'+istr+'.idx')
# get eta value (depends onthe mesh!)
for i,x in enumerate(xs) :
......
benchmarks/titan/run.py
View file @ 792dba47
......@@ -67,9 +67,9 @@ if continue_time:
#sol_old.setFieldName(0, 'eta_old')
#sol_old.setFieldName(0, 'u_old')
#sol_old.setFieldName(0, 'v_old')
#sol_old.readMsh(path_output + "/idx/idx-" + t_start + "_COMP_0.idx",0,0)
#sol_old.readMsh(path_output + "/idx/idx-" + t_start + "_COMP_1.idx",1,1)
#sol_old.readMsh(path_output + "/idx/idx-" + t_start + "_COMP_2.idx",2,2)
#sol_old.importIdx(path_output + "/idx/idx-" + t_start + "_COMP_0.idx",0,0)
#sol_old.importIdx(path_output + "/idx/idx-" + t_start + "_COMP_1.idx",1,1)
#sol_old.importIdx(path_output + "/idx/idx-" + t_start + "_COMP_2.idx",2,2)
else:
......@@ -89,7 +89,7 @@ else:
bath = dgDofContainer(groups, 1)
bath.setFieldName(0, 'bath')
bath.readMsh(path_mesh + "B" + bathy_acc + "_bath_part/" + domain + mesh_acc + "B" + bathy_acc + "_bath_part.idx")
bath.importIdx(path_mesh + "B" + bathy_acc + "_bath_part/" + domain + mesh_acc + "B" + bathy_acc + "_bath_part.idx")
bath_PC = functionPrecomputed(groups, 3, 1)
bath_PC.compute(bath.getFunction())
......
benchmarks/titan/run_old.py
View file @ 792dba47
......@@ -73,7 +73,7 @@ solution.setFieldName(2, 'v')
bath = dgDofContainer(groups, 1)
bath.setFieldName(0, 'bath')
bath.readMsh(path_mesh + "B" + bathy_acc + "_bath_part/" + domain + mesh_acc + "B" + bathy_acc + "_bath_part.idx")
bath.importIdx(path_mesh + "B" + bathy_acc + "_bath_part/" + domain + mesh_acc + "B" + bathy_acc + "_bath_part.idx")
bath_PC = functionPrecomputed(groups, 3, 1)
bath_PC.compute(bath.getFunction())
......
dgpy/scripts/slim.py
View file @ 792dba47
......@@ -1016,7 +1016,7 @@ class Loop:
index = self._index_start+self._n_iter_offline%self._n_index_per_period
else:
index = self._n_iter_offline
i._hydro_sol_dof.readMsh(i._datafile+"-%06d_%06d.idx" %(index,j))
i._hydro_sol_dof.importIdx(i._datafile+"-%06d_%06d.idx" %(index,j))
i._hydro_sol_dof.scatter()
newton_converged = i._temporal_solver.subiterate(i._solution, self._dt, self._time)
if not newton_converged:
......@@ -1026,7 +1026,7 @@ class Loop:
index = self._index_start+self._n_iter_offline%self._n_index_per_period
else:
index = self._n_iter_offline
i._hydro_sol_dof.readMsh(i._datafile+"-%06d_%06d.idx" %(index,j))
i._hydro_sol_dof.importIdx(i._datafile+"-%06d_%06d.idx" %(index,j))
i._hydro_sol_dof.scatter()
for e in self._export_dofs_full:
e[0].exportIdxSubTimeStep(self._index_exporter_full, j, self._time - e[1])
......
dgpy/scripts/slim_private.py
View file @ 792dba47
......@@ -149,7 +149,7 @@ def _load(dof, data_file):
elif (file_name[-4:] == ".msh"):
dof.importMsh(file_name)
elif (file_name[-4:] == ".idx"):
dof.readMsh(file_name)
dof.importIdx(file_name)
else:
dgpy.Msg.Fatal(file_name + " must have one of the following extensions: '.idx', '.msh', '.nc'")
dof.scatter(False)
......@@ -176,7 +176,7 @@ def _load_function(data_file, groups):
return f
elif (file_name[-4:] == ".idx"):
dof = dgpy.dgDofContainer(groups,1)
dof.readMsh(file_name)
dof.importIdx(file_name)
dof.scatter()
f = dof.getFunction()
f.dof = dof
......
dofContainer/dgDofContainer.cpp
View file @ 792dba47
......@@ -1627,6 +1627,121 @@ void dgDofContainer::exportFunctionSurf (functor * fun, const std::string name,
}
}
void _readMsh(dgDofContainer &dof, std::string name, double &time, int &step, std::map<int, int> componentMap){
std::ifstream f (name.c_str());
if(!f.is_open()){
Msg::Fatal("Unable to open import file '%s'", name.c_str());
}
std::string word;
int ibuff;
double dbuff;
f >> word; if (word!="$MeshFormat") Msg::Fatal("bad file '%s'",name.c_str());
f >> dbuff; if (dbuff<2.0) Msg::Fatal("bad file '%s'",name.c_str());
f >> ibuff >> ibuff;
f >> word; if (word!="$EndMeshFormat") Msg::Fatal("bad file '%s'",name.c_str());
f >> word;
if (word =="$InterpolationScheme") {
while (word != "$EndInterpolationScheme" && !f.eof())
f >> word;
f >> word;
}
if (word!="$ElementNodeData") Msg::Fatal("bad file '%s'",name.c_str());
int nStrings;
f >> nStrings;
getline (f, word);
for (int i = 0; i < nStrings; i++)
getline (f, word);
int ndouble;
f >> ndouble >> time;
for (int i = 1; i < ndouble; ++i)
f >> dbuff;
int nint, ncomp, count;
f >> nint >> step >> ncomp >> count;
for (int i = 3; i < nint; ++i)
f >> ibuff;
fullMatrix<double> sol;
std::vector<int> ocomps(ncomp, -1);
for (auto it:componentMap) {
ocomps[it.second] = it.first;
}
if (componentMap.empty()) {
for (int i = 0; i < ncomp; ++i)
ocomps[i] = i;
}
for (int i = 0; i < count; i++) {
int elementNum, size;
f >> elementNum >> size;
int iGroup, iElem;
dof.getGroups()->find(elementNum, iGroup, iElem);
if (iGroup != -1){
dof.getGroupProxy(iGroup).getBlockProxy(iElem, sol);
if (size != sol.size1()) Msg::Fatal("bad size (%i) for element id (%i) in file '%s'",size, elementNum, name.c_str());
for (int k = 0; k < sol.size1(); ++k){
for (int icomp = 0; icomp < ncomp; ++icomp) {
int ocomp = ocomps[icomp];
if (ocomp == -1 || ocomp >= sol.size2()){
f >> dbuff;
}
else {
if(!(f >> sol(k, ocomp)))Msg::Fatal("bad file '%s'",name.c_str());
}
}
}
}
else{
getline(f, word);
}
}
f >> word; if (word!="$EndElementNodeData") Msg::Fatal("bad file '%s' (got '%s')", name.c_str(), word.c_str());
}
static double _importIdx(dgDofContainer &dof, std::string filename, std::map<int, int> componentMap, int next_field) {
std::ifstream f(filename);
std::string buf;
auto dirend = filename.find_last_of("/");
std::string dirname;
if (dirend != std::string::npos)
dirname = filename.substr(0,dirend+1);
double time = 0;
while(f >> buf) {
if (buf == "Merge"){
getline(f, buf);
auto p0 = buf.find('\"');
auto p1 = buf.find('\"',p0+1);
if (p0 == std::string::npos || p1 == std::string::npos)
Msg::Error("invalid file : %s", filename.c_str());
std::string sname = buf.substr(p0+1, p1-p0-1);
std::string ext = sname.substr(sname.find_last_of("."));
if (ext == ".idx")
_importIdx(dof, dirname+sname, componentMap, next_field);
else {
std::map<int, int> shiftedCMap;
for (auto it:componentMap)
shiftedCMap[it.first] = it.second - next_field;
double time;
int step;
_readMsh(dof, dirname + sname, time, step, shiftedCMap);
}
}
else if (buf == "//") {
f >> buf;
if (buf == "field") {
f >> next_field;
getline(f, buf);
}
}
else {
getline(f, buf);
}
}
return time;
}
double dgDofContainer::importIdx(const std::string filename, std::map<int, int> componentMap) {
return _importIdx(*this, filename, componentMap, 0);
}
static void writeMshInterpolationSchemes(FILE *f, const std::string &name, const dgGroupCollection &groups)
{
std::set<const nodalBasis*> allPb;
......@@ -1806,129 +1921,6 @@ void dgDofContainer::importMshNodeData(const std::string name, bool multiFile)
}
void dgDofContainer::_readMsh(std::string name, std::string name_dir, double &time, int &step, int nb_parts, int dofF){
size_t endp = name.size();
std::string f2name = std::string(name, 1, endp-3);
std::ifstream f ((name_dir+f2name).c_str());
if(!f.is_open()){
Msg::Fatal("Unable to open import file '%s'", (name_dir+f2name).c_str());
}
std::string word;
int ibuff;
double dbuff;
f >> word; if (word!="$MeshFormat") Msg::Fatal("bad file '%s'",(name_dir+f2name).c_str());
f >> dbuff; if (dbuff<2.0) Msg::Fatal("bad file '%s'",(name_dir+f2name).c_str());
f >> ibuff >> ibuff;
f >> word; if (word!="$EndMeshFormat") Msg::Fatal("bad file '%s'",(name_dir+f2name).c_str());
f >> word;
if (word =="$InterpolationScheme") {
while (word != "$EndInterpolationScheme" && !f.eof())
f >> word;
f >> word;
}
if (word!="$ElementNodeData") Msg::Fatal("bad file '%s'",(name_dir+f2name).c_str());
int nStrings;
f >> nStrings;
getline (f, word);
for (int i = 0; i < nStrings; i++)
getline (f, word);
f >> dbuff >> time;
f >> dbuff >> step;
int count, rank, cr;
f >> rank>> count;
if(nb_parts>1)
f >> cr;
fullMatrix<double> sol;
for (int i = 0; i < count; i++) {
int elementNum, size;
f >> elementNum >> size;
int iGroup, iElem;
_groups->find(elementNum, iGroup, iElem);
if (iGroup != -1){
getGroupProxy(iGroup).getBlockProxy(iElem, sol);
if (size != sol.size1()) Msg::Fatal("bad size (%i) for element id (%i) in file '%s'",size, elementNum, (name_dir+f2name).c_str());
for (int k = 0; k < sol.size1(); ++k) {
if(!(f >> sol(k, dofF)))Msg::Fatal("bad file '%s'",(name_dir+f2name).c_str());
}
}
else{
getline(f, word);
}
}
f >> word; if (word!="$EndElementNodeData") Msg::Fatal("bad file '%s' (got '%s')", (name_dir+f2name).c_str(), word.c_str());
}
void dgDofContainer::readMsh(const std::string name, double &time, int &step, int inField, int outField)
{
if((inField == -1 && outField !=-1) || (outField == -1 && inField !=-1))
Msg::Fatal("Both fields ids need to be -1 to import all fields or 2 existing positive fields ids should be considered");
std::string name_file, name_dir;
size_t lastp = name.find_last_of('/');
size_t endp = name.size();
if(lastp != std::string::npos){
name_file = std::string(name, lastp+1, endp);
name_dir = std::string(name, 0, lastp+1);
}
else{
name_file=name;
name_dir="";
}
std::ifstream g1 (name.c_str());
if(!g1.is_open()){
Msg::Fatal("Unable to open import file '%s'", name.c_str());
}
std::string text, f1name;
int nb_fields, nb_parts, iField, jField;
g1 >> text >> text;
g1 >> nb_fields;
if(inField < -1 || inField >= nFieldMax()){
Msg::Fatal("Field %d does not exist for the actual dgDofContainer", inField);
}
if(outField < -1 || outField >= nb_fields){
Msg::Fatal("Field %d does not exist in the file %s", outField, name.c_str());
}
g1 >> text >> text;
g1 >> nb_parts;
if (nb_fields > 1){
for(int iF = 0; iF < nb_fields; iF++){
g1 >> text >> text;
g1 >> iField;
g1 >> text >> text;
if(iField == outField || outField == -1){
int dofF;
if(inField == -1){
dofF = iF;
}
else{
dofF=inField;
}
size_t endp = text.size();
f1name = std::string(text, 1, endp-3);
std::ifstream g2 ((name_dir+f1name).c_str());
if(!g2.is_open()){
Msg::Fatal("Unable to open import file '%s'", f1name.c_str());
}
g2 >> text >> text;
g2 >> jField;
if(iField != jField)
Msg::Fatal("Fields are not compatible!");
for (int iP = 0; iP < nb_parts; iP++){
g2 >> text >> text;
_readMsh(text, name_dir, time, step, nb_parts, dofF);
}
}
}
}
else{
for (int iP = 0; iP < nb_parts; iP++){
g1 >> text >> text;
_readMsh(text, name_dir, time, step, nb_parts, 0);
}
}
}
void dgDofContainer::exportMsh(const std::string name, double time, int step, std::string fieldName) const
{
for (int ICOMP=0; ICOMP < nFieldMax(); ++ICOMP)
......
dofContainer/dgDofContainer.h
View file @ 792dba47
......@@ -74,9 +74,8 @@ class dgDofContainer
std::vector<dgFullMatrix<double> > _dataProxys; // proxys
std::vector<int> _groupFirstDofId;
// _readMsh, is a subfunction of readMsh, which reads msh files from idx files
void _readMsh(std::string name, std::string name_dir, double &time, int &step, int nb_parts, int dofF);
void _init();
// read continuous (CG) data
void readNodeData(std::ifstream &f, const std::string name, int ICOMP);
protected:
......@@ -190,8 +189,8 @@ class dgDofContainer
void importMsh(const std::string filename, double &time, int &step, std::string &fieldName);
/** Import a msh file in the dof container using the "NodeData" file format. 'filename' refers to the part of the file name before _COMPXX.msh */
void importMshNodeData(const std::string name, bool multiFile = true);
/** Import a msh or idx file */
void readMsh(const std::string name, double &time, int &step, int inField=-1, int outField=-1);
/** Import all the idx and msh files listed in an idx file*/
double importIdx(const std::string name, std::map<int, int> componentMap={});
/** Export a function for gmsh visualization, (this dof is used as solution). If the function is a vector, export a vector field instead of the three component fields of the vector */
void exportFunctionMsh (const functor * fun, const std::string name, double time=0.0, int step=0, std::string fieldname="") const;
/** Export a function for gmsh visualization, (this dof is used as solution). It will export a field on a physical surface*/
......
modules/shallowWater/tests/interface_sw2Converge/test.py
View file @ 792dba47
......@@ -33,9 +33,9 @@ def mergeEtaUV(cmap,val,eta,uv):
groupsRef = dgpy.dgGroupCollection("output/square-%i.msh" % nstage, 1)
etaRef = dgpy.dgDofContainer(groupsRef, 1)
etaRef.readMsh("output/dof-%i-end/sw2d/eta/eta-000001.idx" % (nstage))